Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ANKRD34A-201ENST00000606888 3613 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 RPAP1-201ENST00000304330 4665 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CNTROB-201ENST00000380262 3769 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC005921.3-201ENST00000623774 2151 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 SPATA13-202ENST00000382095 6665 ntAPPRIS P3 TSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 PDIA6-204ENST00000404824 2236 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 IL9RP3-201ENST00000442856 1674 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ATG7-202ENST00000354956 2296 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TSEN2-204ENST00000415684 2279 ntTSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 SYNPO-204ENST00000519664 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 PCDHGB5-201ENST00000617380 4578 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TM9SF4-201ENST00000217315 4032 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CHID1-204ENST00000449825 3537 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 DNAJA4-201ENST00000343789 2961 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 IL12A-AS1-203ENST00000497452 2425 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 LINC02080-201ENST00000585863 3085 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CEP170-204ENST00000366544 6805 ntTSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 DAPK2-213ENST00000612884 8086 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 KCNB1-201ENST00000371741 11879 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CEP89-201ENST00000305768 5678 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TMC2-201ENST00000358864 3169 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CXCL13-201ENST00000286758 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TSPY5P-201ENST00000426936 936 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CROCCP5-201ENST00000436658 830 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AL139010.1-201ENST00000454878 894 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC098859.1-201ENST00000502915 1238 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 FITM1-202ENST00000559294 800 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC090616.6-201ENST00000582640 721 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AL022326.1-202ENST00000641533 845 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC064801.2-201ENST00000625052 1303 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CCDC144A-206ENST00000399273 8686 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 UCK1-202ENST00000372210 2051 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 TBC1D16-202ENST00000340848 4244 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 DIS3-205ENST00000545453 3651 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 JMJD7-PLA2G4B-201ENST00000342159 2966 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 UBOX5-202ENST00000348031 4469 ntAPPRIS ALT1 TSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 CENPP-201ENST00000375576 3088 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 AC011511.5-201ENST00000589379 3219 ntBASIC8.69□□□□□ -1.02
LINC00643Q86TS7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 C16orf82-202ENST00000505035 2459 ntAPPRIS P5 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ACSL1-210ENST00000513317 2469 ntAPPRIS ALT1 TSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 ZNF542P-207ENST00000495307 3393 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 NR2F1-AS1-213ENST00000607797 3380 ntTSL 2 BASIC8.69□□□□□ -1.02
LINC00643Q86TS7 PAX6-208ENST00000379132 2576 ntAPPRIS ALT1 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AVL9-202ENST00000409301 4336 ntTSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 GALT-201ENST00000378842 1768 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ST5-230ENST00000530438 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PTCD2-211ENST00000536805 1911 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 DPY19L2P2-204ENST00000438364 3947 ntTSL 2 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 CTLA4-202ENST00000302823 1977 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 UBASH3A-201ENST00000291535 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 TTLL2-201ENST00000239587 2075 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PCDHB11-201ENST00000354757 4198 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 WDR24-202ENST00000293883 3245 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 RAPGEF3-204ENST00000405493 5751 ntAPPRIS P3 TSL 5 BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 ABL2-202ENST00000367623 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
LINC00643Q86TS7 AP1M1-203ENST00000444449 2311 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms