Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 RNA5SP359-201ENST00000364838 113 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 GUSBP10-201ENST00000417412 665 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 TLE1P1-201ENST00000422965 589 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 TREHP1-201ENST00000531328 465 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AC003102.2-201ENST00000589195 1469 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 AL672207.1-201ENST00000328462 1570 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MTHFR-210ENST00000641407 2387 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MIR1301-201ENST00000408518 82 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AC092580.1-201ENST00000433998 658 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 BCL2L12P1-201ENST00000508390 733 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MIR6746-201ENST00000620971 63 ntBASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL28A1Q2UY09 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms