Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CKS1BP61024 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CKS1BP61024 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
CKS1BP61024 QRICH1-204ENST00000424300 3009 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CKS1BP61024 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CKS1BP61024 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CKS1BP61024 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 AL118505.1-201ENST00000619370 1932 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 AK4-201ENST00000327299 6836 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 SMARCE1-202ENST00000348513 5840 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 RPS6KA1-220ENST00000531382 2359 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 GPR156-202ENST00000461057 2525 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 API5-203ENST00000455725 2257 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 PCDHGA7-201ENST00000518325 4605 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 PARG-207ENST00000616448 3197 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 FN1-206ENST00000359671 8524 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 AL645937.2-201ENST00000396808 931 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 CNN2P2-201ENST00000443536 909 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC10.03□□□□□ -0.8
CKS1BP61024 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 CNN2P3-201ENST00000450201 906 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC10.03□□□□□ -0.8
CKS1BP61024 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC10.03□□□□□ -0.8
CKS1BP61024 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC10.03□□□□□ -0.8
CKS1BP61024 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC10.03□□□□□ -0.8
CKS1BP61024 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
CKS1BP61024 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 TEX28P1-201ENST00000613479 1221 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 TEX28P2-201ENST00000617764 1221 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 AL136317.3-201ENST00000618497 906 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 KCNMB1-201ENST00000274629 5052 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 FAM230B-208ENST00000451257 3566 ntTSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
CKS1BP61024 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 FOSB-206ENST00000586615 3774 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 OR2V2-202ENST00000641492 4777 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
CKS1BP61024 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
CKS1BP61024 AC023090.2-201ENST00000625182 2110 ntBASIC10.03□□□□□ -0.8
CKS1BP61024 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
CKS1BP61024 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC10.02□□□□□ -0.8
CKS1BP61024 STK24-201ENST00000376547 2492 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.8
CKS1BP61024 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC10.02□□□□□ -0.8
CKS1BP61024 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.8
CKS1BP61024 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.8
CKS1BP61024 SLC45A3-201ENST00000367145 3341 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 SMAP1-203ENST00000370455 3333 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 PRPF40B-202ENST00000380281 3154 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 PCDHA4-204ENST00000618834 10557 ntBASIC10.02□□□□□ -0.8
CKS1BP61024 SEPT6-205ENST00000394610 4694 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
CKS1BP61024 SLITRK3-201ENST00000241274 4391 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms