Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PAM16-211ENST00000575848 518 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CR1P49238 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CR1P49238 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CX3CR1P49238 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CR1P49238 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CR1P49238 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CX3CR1P49238 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 AC114271.1-201ENST00000612689 2813 ntBASIC12.5□□□□□ -0.41
CX3CR1P49238 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 PGAM1P5-201ENST00000548011 764 ntBASIC12.5□□□□□ -0.41
CX3CR1P49238 AL160314.3-201ENST00000556041 767 ntBASIC12.5□□□□□ -0.41
CX3CR1P49238 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 NAA38-206ENST00000576384 424 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CR1P49238 MIR6775-201ENST00000617557 69 ntBASIC12.5□□□□□ -0.41
CX3CR1P49238 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 CYP4F23P-201ENST00000593402 1579 ntBASIC12.5□□□□□ -0.41
CX3CR1P49238 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CX3CR1P49238 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CX3CR1P49238 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CX3CR1P49238 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CR1P49238 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 AL365181.3-201ENST00000605886 3222 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 NCLP1-201ENST00000445357 1963 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
CX3CR1P49238 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 AL590824.1-201ENST00000403828 1349 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 STX1A-203ENST00000395155 783 ntTSL 2 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms