Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 AL137783.1-201ENST00000623494 1896 ntBASIC11.69□□□□□ -0.54
CDX1P47902 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC11.69□□□□□ -0.54
CDX1P47902 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC11.69□□□□□ -0.54
CDX1P47902 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CDX1P47902 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CDX1P47902 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC11.68□□□□□ -0.54
CDX1P47902 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
CDX1P47902 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 MIR1908-201ENST00000410394 80 ntBASIC11.68□□□□□ -0.54
CDX1P47902 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC11.68□□□□□ -0.54
CDX1P47902 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 Z93015.1-201ENST00000451718 390 ntBASIC11.68□□□□□ -0.54
CDX1P47902 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 COX5BP1-201ENST00000507622 393 ntBASIC11.68□□□□□ -0.54
CDX1P47902 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 C2orf69P2-201ENST00000562032 1123 ntBASIC11.68□□□□□ -0.54
CDX1P47902 DERL2-202ENST00000570848 657 ntTSL 5 BASIC11.68□□□□□ -0.54
CDX1P47902 RN7SL713P-201ENST00000582127 302 ntBASIC11.68□□□□□ -0.54
CDX1P47902 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC11.68□□□□□ -0.54
CDX1P47902 AC138466.3-201ENST00000619983 221 ntBASIC11.68□□□□□ -0.54
CDX1P47902 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.68□□□□□ -0.54
CDX1P47902 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
CDX1P47902 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 INE2-201ENST00000630399 1874 ntBASIC11.68□□□□□ -0.54
CDX1P47902 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CDX1P47902 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CDX1P47902 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 LILRP1-201ENST00000444199 1370 ntBASIC11.67□□□□□ -0.54
CDX1P47902 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC11.67□□□□□ -0.54
CDX1P47902 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CDX1P47902 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CDX1P47902 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC11.67□□□□□ -0.54
CDX1P47902 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms