Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 AC135782.3-201ENST00000562782 2105 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 AL591122.2-201ENST00000624125 1853 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 AC009474.1-201ENST00000455096 1565 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.66□□□□□ -0.06
PTPN9P43378 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.66□□□□□ -0.06
PTPN9P43378 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.66□□□□□ -0.06
PTPN9P43378 LINC00265-2P-201ENST00000413372 782 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.66□□□□□ -0.06
PTPN9P43378 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.66□□□□□ -0.06
PTPN9P43378 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
PTPN9P43378 AC008723.1-201ENST00000506922 207 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 AC020922.3-201ENST00000595064 547 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 AL161773.1-201ENST00000624845 863 ntBASIC14.66□□□□□ -0.06
PTPN9P43378 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.66□□□□□ -0.06
PTPN9P43378 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PTPN9P43378 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTPN9P43378 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PTPN9P43378 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PTPN9P43378 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
PTPN9P43378 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.65□□□□□ -0.06
PTPN9P43378 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.65□□□□□ -0.06
PTPN9P43378 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.65□□□□□ -0.06
PTPN9P43378 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.65□□□□□ -0.06
PTPN9P43378 DUTP3-201ENST00000450025 415 ntBASIC14.65□□□□□ -0.06
PTPN9P43378 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.65□□□□□ -0.06
PTPN9P43378 AC242376.1-201ENST00000559033 726 ntBASIC14.65□□□□□ -0.06
PTPN9P43378 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.65□□□□□ -0.06
PTPN9P43378 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.65□□□□□ -0.06
PTPN9P43378 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 MARK2P16-201ENST00000605714 1723 ntBASIC14.65□□□□□ -0.06
PTPN9P43378 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 AL359845.1-201ENST00000458202 1648 ntBASIC14.65□□□□□ -0.06
PTPN9P43378 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
PTPN9P43378 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PTPN9P43378 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTPN9P43378 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
PTPN9P43378 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms