Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 AL591122.2-201ENST00000624125 1853 ntBASIC13.41□□□□□ -0.26
SOX3P41225 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX3P41225 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 AC004899.2-201ENST00000622993 3860 ntBASIC13.4□□□□□ -0.26
SOX3P41225 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 AC018629.1-201ENST00000623381 1736 ntBASIC13.4□□□□□ -0.26
SOX3P41225 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX3P41225 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
SOX3P41225 KRT18P36-201ENST00000411618 1276 ntBASIC13.4□□□□□ -0.26
SOX3P41225 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX3P41225 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.4□□□□□ -0.26
SOX3P41225 AL021578.1-201ENST00000613646 709 ntBASIC13.4□□□□□ -0.26
SOX3P41225 AP001505.2-201ENST00000616815 443 ntBASIC13.4□□□□□ -0.26
SOX3P41225 AC092299.1-201ENST00000632679 757 ntBASIC13.4□□□□□ -0.26
SOX3P41225 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 NAP1L6-202ENST00000641404 1222 ntBASIC13.4□□□□□ -0.26
SOX3P41225 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 AC004241.5-201ENST00000623870 2448 ntBASIC13.4□□□□□ -0.26
SOX3P41225 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.4□□□□□ -0.26
SOX3P41225 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.4□□□□□ -0.26
SOX3P41225 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SOX3P41225 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SOX3P41225 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.4□□□□□ -0.27
SOX3P41225 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
SOX3P41225 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.27
SOX3P41225 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SOX3P41225 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 AL365181.3-201ENST00000605886 3222 ntBASIC13.39□□□□□ -0.27
SOX3P41225 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.39□□□□□ -0.27
SOX3P41225 Z97180.1-201ENST00000445173 988 ntBASIC13.39□□□□□ -0.27
SOX3P41225 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.39□□□□□ -0.27
SOX3P41225 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.39□□□□□ -0.27
SOX3P41225 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SOX3P41225 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
SOX3P41225 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms