Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 HLA-DQB3-203ENST00000425319 356 ntBASIC16.07■□□□□ 0.16
SCN4AP35499 RPL21P135-201ENST00000442539 791 ntBASIC16.07■□□□□ 0.16
SCN4AP35499 FP325317.1-201ENST00000539936 1042 ntBASIC16.07■□□□□ 0.16
SCN4AP35499 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.07■□□□□ 0.16
SCN4AP35499 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
SCN4AP35499 AC244097.1-201ENST00000621631 1216 ntBASIC16.07■□□□□ 0.16
SCN4AP35499 AC112702.1-201ENST00000623712 366 ntBASIC16.07■□□□□ 0.16
SCN4AP35499 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.07■□□□□ 0.16
SCN4AP35499 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.07■□□□□ 0.16
SCN4AP35499 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.07■□□□□ 0.16
SCN4AP35499 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SCN4AP35499 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 AC023157.3-201ENST00000619086 2088 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 SIGLEC17P-204ENST00000618545 1517 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 ALMS1P1-201ENST00000428767 921 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 GAPDHP29-201ENST00000429913 985 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 BICD1P1-201ENST00000457832 1222 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC16.06■□□□□ 0.16
SCN4AP35499 AK2-208ENST00000487289 920 ntTSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 AC007622.1-201ENST00000488371 535 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.06■□□□□ 0.16
SCN4AP35499 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC16.06■□□□□ 0.16
SCN4AP35499 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC16.06■□□□□ 0.16
SCN4AP35499 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC16.06■□□□□ 0.16
SCN4AP35499 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 MKRN7P-201ENST00000433469 1371 ntBASIC16.06■□□□□ 0.16
SCN4AP35499 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
SCN4AP35499 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 VWA3B-221ENST00000614454 1542 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SCN4AP35499 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SCN4AP35499 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC16.05■□□□□ 0.16
SCN4AP35499 CHCHD2P6-201ENST00000454346 447 ntBASIC16.05■□□□□ 0.16
SCN4AP35499 AC025822.1-201ENST00000455525 633 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 FPGT-205ENST00000482102 561 ntTSL 4 BASIC16.05■□□□□ 0.16
SCN4AP35499 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC16.05■□□□□ 0.16
SCN4AP35499 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC16.05■□□□□ 0.16
SCN4AP35499 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC16.05■□□□□ 0.16
SCN4AP35499 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 MIR4459-201ENST00000581837 66 ntBASIC16.05■□□□□ 0.16
SCN4AP35499 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SCN4AP35499 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 BAP1-211ENST00000615113 489 ntBASIC16.05■□□□□ 0.16
SCN4AP35499 RPS9-213ENST00000626547 476 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SCN4AP35499 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.05■□□□□ 0.16
SCN4AP35499 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SCN4AP35499 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.05■□□□□ 0.16
SCN4AP35499 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.05■□□□□ 0.16
SCN4AP35499 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SCN4AP35499 TFAM-201ENST00000373895 973 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms