Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 DKKL1P1-201ENST00000400550 698 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 HNRNPA1P2-207ENST00000432375 960 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 RN7SL767P-201ENST00000493013 295 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 RN7SKP155-201ENST00000516031 288 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 HNRNPA1P5-201ENST00000558213 966 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 AC145285.5-201ENST00000562217 361 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 AC004223.2-201ENST00000590309 544 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 AL359091.4-201ENST00000610052 409 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 AC092723.2-201ENST00000624955 793 ntBASIC12.37□□□□□ -0.43
COL8A1P27658 HLF-202ENST00000430986 1385 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.37□□□□□ -0.43
COL8A1P27658 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
COL8A1P27658 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
COL8A1P27658 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL8A1P27658 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
COL8A1P27658 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 C8orf49-201ENST00000525043 1968 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC006504.5-208ENST00000588784 2401 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 AC136621.1-201ENST00000624017 2304 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
COL8A1P27658 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC053503.3-201ENST00000448375 114 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC025594.1-201ENST00000469533 543 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 ALG1L15P-201ENST00000482834 794 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 PFN2-212ENST00000490975 858 ntTSL 4 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC12.36□□□□□ -0.43
COL8A1P27658 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC12.36□□□□□ -0.43
COL8A1P27658 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 MIR6893-201ENST00000613458 69 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 TMBIM7P-203ENST00000641617 1718 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 AC006486.2-201ENST00000624246 2199 ntBASIC12.36□□□□□ -0.43
COL8A1P27658 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms