Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 AL359094.2-201ENST00000420941 750 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A3P12111 GAPDHP1-201ENST00000452570 1005 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 PTDSS1-206ENST00000522072 1112 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 AC013268.4-201ENST00000637413 2228 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 AP005117.1-202ENST00000581724 1908 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 AGFG1-203ENST00000409171 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 KLK8-201ENST00000291726 853 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 IGLV3-22-201ENST00000390307 409 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL6A3P12111 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 PIN1P1-202ENST00000439639 301 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.04□□□□□ -0.16
COL6A3P12111 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 LAMTOR4-207ENST00000474141 519 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 RN7SL307P-201ENST00000490342 295 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 MYADML-202ENST00000490394 797 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A3P12111 FAM83A-AS1-201ENST00000517519 1158 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 AC063924.1-201ENST00000546680 673 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 CD63-212ENST00000552067 621 ntTSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 AC005154.1-227ENST00000579174 755 ntTSL 3 BASIC14.04□□□□□ -0.16
COL6A3P12111 AC010615.2-201ENST00000596705 566 ntTSL 4 BASIC14.04□□□□□ -0.16
COL6A3P12111 FAM236C-201ENST00000636267 463 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
COL6A3P12111 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 KIR2DP1-201ENST00000415311 1331 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL6A3P12111 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
COL6A3P12111 MTND6P7-201ENST00000433237 524 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 DDTP1-201ENST00000443589 383 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 AC068620.1-201ENST00000470544 798 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 RN7SL292P-201ENST00000473305 266 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 RN7SL16P-201ENST00000476316 269 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 AC051619.6-201ENST00000558039 595 ntTSL 4 BASIC14.04□□□□□ -0.16
COL6A3P12111 MIR3194-201ENST00000582236 73 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 AC090093.1-201ENST00000611315 271 ntBASIC14.04□□□□□ -0.16
COL6A3P12111 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 SERF1A-209ENST00000513436 1693 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A3P12111 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 AL022313.4-201ENST00000562756 2046 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 AD000864.1-201ENST00000624076 2295 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 HSD17B3-201ENST00000375262 984 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 C2orf27AP2-201ENST00000438438 555 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 AC073472.1-201ENST00000441433 803 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 AC022483.2-201ENST00000461464 555 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC14.03□□□□□ -0.16
COL6A3P12111 AC091153.4-201ENST00000570493 480 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 MXRA7-205ENST00000588114 521 ntAPPRIS ALT2 TSL 4 BASIC14.03□□□□□ -0.16
COL6A3P12111 UPF3B-204ENST00000619445 1385 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 KRT36-201ENST00000328119 1644 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A3P12111 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 AC024475.2-201ENST00000312173 879 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 KRTAP10-8-201ENST00000334662 876 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
COL6A3P12111 AL390061.1-201ENST00000457804 293 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 OR1X5P-201ENST00000510464 894 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 ROM1-205ENST00000534093 862 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A3P12111 AP000763.1-201ENST00000539481 325 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 ALOX12-AS1-209ENST00000575889 439 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A3P12111 CIRBP-AS1-201ENST00000585832 994 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 AC090950.1-202ENST00000605733 644 ntBASIC14.03□□□□□ -0.16
COL6A3P12111 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A3P12111 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms