Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00346Q8IVM7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AC018629.1-201ENST00000623381 1736 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 MIR658-201ENST00000385210 100 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 FAM21FP-201ENST00000426241 1131 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 OR2R1P-201ENST00000441404 914 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 HSPB1P2-201ENST00000448722 546 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 SCARNA21-201ENST00000517026 139 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AGER-214ENST00000538695 487 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AC140658.4-201ENST00000561990 352 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AP005482.1-201ENST00000563722 1273 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 MIR4259-201ENST00000584466 101 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AC092299.1-201ENST00000632679 757 ntBASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00346Q8IVM7 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
LINC00346Q8IVM7 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LINC00346Q8IVM7 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
LINC00346Q8IVM7 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 HMGA1P1-201ENST00000415560 1062 ntBASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 AK2P2-201ENST00000439142 405 ntBASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 Z93015.1-201ENST00000451718 390 ntBASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 RPL18P13-201ENST00000478088 569 ntBASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 RPSAP36-202ENST00000494591 1261 ntBASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00346Q8IVM7 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms