Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
RNF4P78317 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 AL627231.1-201ENST00000394467 1125 ntBASIC13.14□□□□□ -0.31
RNF4P78317 AL592076.1-201ENST00000424448 303 ntBASIC13.14□□□□□ -0.31
RNF4P78317 EEF1DP6-201ENST00000449232 372 ntBASIC13.14□□□□□ -0.31
RNF4P78317 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.14□□□□□ -0.31
RNF4P78317 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.14□□□□□ -0.31
RNF4P78317 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 AL606495.2-201ENST00000605867 535 ntBASIC13.14□□□□□ -0.31
RNF4P78317 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.14□□□□□ -0.31
RNF4P78317 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 MIR645-201ENST00000385283 94 ntBASIC13.13□□□□□ -0.31
RNF4P78317 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC13.13□□□□□ -0.31
RNF4P78317 BX679664.3-201ENST00000414070 555 ntBASIC13.13□□□□□ -0.31
RNF4P78317 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.13□□□□□ -0.31
RNF4P78317 AC113935.1-201ENST00000471722 555 ntBASIC13.13□□□□□ -0.31
RNF4P78317 AC005740.1-201ENST00000515639 522 ntBASIC13.13□□□□□ -0.31
RNF4P78317 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.13□□□□□ -0.31
RNF4P78317 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.13□□□□□ -0.31
RNF4P78317 AL021707.6-201ENST00000609212 491 ntBASIC13.13□□□□□ -0.31
RNF4P78317 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.13□□□□□ -0.31
RNF4P78317 BAP1-211ENST00000615113 489 ntBASIC13.13□□□□□ -0.31
RNF4P78317 AC009560.1-201ENST00000620208 434 ntBASIC13.13□□□□□ -0.31
RNF4P78317 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 AC087386.2-201ENST00000623212 4637 ntBASIC13.13□□□□□ -0.31
RNF4P78317 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
RNF4P78317 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNF4P78317 AL157996.1-201ENST00000624684 2299 ntBASIC13.13□□□□□ -0.31
RNF4P78317 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.13□□□□□ -0.31
RNF4P78317 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC13.13□□□□□ -0.31
RNF4P78317 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNF4P78317 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms