Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TPM4P67936 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM4P67936 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM4P67936 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM4P67936 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
TPM4P67936 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM4P67936 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM4P67936 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM4P67936 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM4P67936 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
TPM4P67936 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.96■□□□□ 0.15
TPM4P67936 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 AC012441.1-201ENST00000446669 685 ntBASIC15.96■□□□□ 0.15
TPM4P67936 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM4P67936 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 AL132655.2-201ENST00000596276 594 ntBASIC15.96■□□□□ 0.15
TPM4P67936 AC021016.3-201ENST00000608367 477 ntBASIC15.96■□□□□ 0.15
TPM4P67936 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TPM4P67936 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.96■□□□□ 0.15
TPM4P67936 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM4P67936 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM4P67936 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 AC007541.1-201ENST00000570282 1469 ntBASIC15.96■□□□□ 0.14
TPM4P67936 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
TPM4P67936 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM4P67936 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
TPM4P67936 AL445250.1-201ENST00000641671 2259 ntBASIC15.96■□□□□ 0.14
TPM4P67936 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM4P67936 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM4P67936 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 BAATP1-201ENST00000412284 1225 ntBASIC15.95■□□□□ 0.14
TPM4P67936 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.95■□□□□ 0.14
TPM4P67936 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM4P67936 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TPM4P67936 PTP4A1P2-201ENST00000546033 454 ntBASIC15.95■□□□□ 0.14
TPM4P67936 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.95■□□□□ 0.14
TPM4P67936 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms