Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.72□□□□□ -0.37
CLRN1P58418 KRT18P15-201ENST00000458108 1291 ntBASIC12.72□□□□□ -0.37
CLRN1P58418 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 AC005740.2-201ENST00000511085 419 ntBASIC12.72□□□□□ -0.37
CLRN1P58418 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC12.72□□□□□ -0.37
CLRN1P58418 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC12.72□□□□□ -0.37
CLRN1P58418 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.72□□□□□ -0.37
CLRN1P58418 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.72□□□□□ -0.37
CLRN1P58418 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.72□□□□□ -0.37
CLRN1P58418 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC12.72□□□□□ -0.37
CLRN1P58418 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC12.72□□□□□ -0.37
CLRN1P58418 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.72□□□□□ -0.37
CLRN1P58418 AL359881.2-201ENST00000602973 570 ntBASIC12.72□□□□□ -0.37
CLRN1P58418 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CLRN1P58418 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CLRN1P58418 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 AC089987.1-201ENST00000551654 2209 ntBASIC12.72□□□□□ -0.37
CLRN1P58418 RAN-210ENST00000541630 1475 ntTSL 2 BASIC12.72□□□□□ -0.37
CLRN1P58418 AC007952.5-201ENST00000572818 1486 ntBASIC12.72□□□□□ -0.37
CLRN1P58418 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CLRN1P58418 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC12.71□□□□□ -0.37
CLRN1P58418 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
CLRN1P58418 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 AC092580.1-201ENST00000433998 658 ntBASIC12.71□□□□□ -0.37
CLRN1P58418 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.71□□□□□ -0.37
CLRN1P58418 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC12.71□□□□□ -0.37
CLRN1P58418 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.71□□□□□ -0.37
CLRN1P58418 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 AC022748.3-201ENST00000621828 275 ntBASIC12.71□□□□□ -0.37
CLRN1P58418 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.71□□□□□ -0.37
CLRN1P58418 AP002353.1-201ENST00000528257 1599 ntBASIC12.71□□□□□ -0.37
CLRN1P58418 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CLRN1P58418 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.71□□□□□ -0.37
CLRN1P58418 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.71□□□□□ -0.37
CLRN1P58418 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
CLRN1P58418 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CLRN1P58418 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CLRN1P58418 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CLRN1P58418 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms