Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL133338.1-201ENST00000565695 1517 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 MIR645-201ENST00000385283 94 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 AL353637.1-201ENST00000451571 732 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 AC012618.1-201ENST00000461223 412 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.68□□□□□ -0.06
PTPN9P43378 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.68□□□□□ -0.06
PTPN9P43378 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 MIR3619-201ENST00000579667 83 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 AP001505.2-201ENST00000616815 443 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 AC015967.2-201ENST00000624092 234 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 AC006435.4-201ENST00000625037 234 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 AL356737.1-201ENST00000634391 234 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.68□□□□□ -0.06
PTPN9P43378 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.68□□□□□ -0.06
PTPN9P43378 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 AC107918.4-201ENST00000641966 3141 ntBASIC14.68□□□□□ -0.06
PTPN9P43378 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTPN9P43378 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.68□□□□□ -0.06
PTPN9P43378 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 KRT18P9-201ENST00000604826 1300 ntBASIC14.67□□□□□ -0.06
PTPN9P43378 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
PTPN9P43378 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
PTPN9P43378 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.67□□□□□ -0.06
PTPN9P43378 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 AC026320.2-201ENST00000434379 478 ntBASIC14.67□□□□□ -0.06
PTPN9P43378 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 Z97180.1-201ENST00000445173 988 ntBASIC14.67□□□□□ -0.06
PTPN9P43378 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.67□□□□□ -0.06
PTPN9P43378 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.67□□□□□ -0.06
PTPN9P43378 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.67□□□□□ -0.06
PTPN9P43378 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.67□□□□□ -0.06
PTPN9P43378 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.67□□□□□ -0.06
PTPN9P43378 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 AC026803.1-201ENST00000569130 274 ntBASIC14.67□□□□□ -0.06
PTPN9P43378 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.67□□□□□ -0.06
PTPN9P43378 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.67□□□□□ -0.06
PTPN9P43378 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.67□□□□□ -0.06
PTPN9P43378 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PTPN9P43378 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms