Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 CXorf40B-201ENST00000355203 1067 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 CIDECP-203ENST00000424691 1088 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 AC004870.4-202ENST00000433337 455 ntTSL 3 BASIC14.06□□□□□ -0.16
COL6A3P12111 AC023157.1-201ENST00000453713 402 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 LINC00470-211ENST00000584492 1281 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
COL6A3P12111 RN7SL341P-201ENST00000613745 298 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 AC130469.2-201ENST00000625112 1092 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 AL669831.6-201ENST00000635557 837 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 AL358215.3-201ENST00000640695 1186 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 AL356585.2-201ENST00000625078 2396 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 AC005037.1-202ENST00000332935 820 ntTSL 3 BASIC14.06□□□□□ -0.16
COL6A3P12111 SNORA9B-201ENST00000384170 133 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 CTF2P-201ENST00000412003 604 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.06□□□□□ -0.16
COL6A3P12111 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 VWA3B-221ENST00000614454 1542 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 TEX101-203ENST00000602198 1446 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC14.06□□□□□ -0.16
COL6A3P12111 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 PROX1-AS1-205ENST00000598091 720 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 UBR1-212ENST00000627960 189 ntTSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 HIST1H2APS4-202ENST00000635537 681 ntBASIC14.06□□□□□ -0.16
COL6A3P12111 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A3P12111 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 NTM-201ENST00000374784 1315 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
COL6A3P12111 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 PSORS1C2-201ENST00000259845 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 OR9G1-201ENST00000312153 918 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
COL6A3P12111 AQP7P1-201ENST00000412626 1045 ntBASIC14.05□□□□□ -0.16
COL6A3P12111 AC104123.1-201ENST00000502645 473 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 ERH-202ENST00000555373 586 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A3P12111 AC093802.2-201ENST00000567853 583 ntBASIC14.05□□□□□ -0.16
COL6A3P12111 FANCI-214ENST00000567996 1070 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AC021594.2-201ENST00000592499 527 ntTSL 3 BASIC14.05□□□□□ -0.16
COL6A3P12111 LINC01988-202ENST00000636975 921 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AL807752.1-201ENST00000395082 1322 ntBASIC14.05□□□□□ -0.16
COL6A3P12111 LINC01515-201ENST00000433152 1339 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL6A3P12111 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.05□□□□□ -0.16
COL6A3P12111 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 AP000925.1-201ENST00000425960 1449 ntBASIC14.05□□□□□ -0.16
COL6A3P12111 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 JAML-211ENST00000533261 1508 ntTSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.05□□□□□ -0.16
COL6A3P12111 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL6A3P12111 PRY-201ENST00000303728 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 PRY2-201ENST00000303804 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 CD300A-201ENST00000310828 631 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 PRYP3-201ENST00000343584 1063 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 ADGRG5-207ENST00000615867 762 ntTSL 4 BASIC14.05□□□□□ -0.16
COL6A3P12111 PSMB3-211ENST00000619426 773 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL6A3P12111 AC012186.3-201ENST00000623850 485 ntBASIC14.05□□□□□ -0.16
COL6A3P12111 AL139035.1-202ENST00000626308 565 ntTSL 4 BASIC14.05□□□□□ -0.16
COL6A3P12111 CELF4-212ENST00000588597 1444 ntTSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms