Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 RPL13AP3-202ENST00000494676 1473 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AIG1-203ENST00000367596 559 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 MIR181D-201ENST00000384853 137 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 RN7SKP199-201ENST00000410325 305 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 ST13P19-201ENST00000442505 1124 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC099328.1-201ENST00000498809 1030 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 ALG1L7P-201ENST00000502317 768 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 BAK1P2-201ENST00000532665 631 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AL079304.1-201ENST00000554595 828 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 NDUFB10P1-201ENST00000567319 521 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 RN7SL480P-201ENST00000581481 294 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC022966.2-201ENST00000587434 367 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AL021707.6-201ENST00000609212 491 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC091769.1-201ENST00000619576 568 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AC007686.3-201ENST00000619017 3487 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 LINC00528-201ENST00000600723 2160 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 ODCP-201ENST00000459650 1639 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 AGAP7P-201ENST00000582299 2062 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 AGAP14-201ENST00000624701 2060 ntBASIC15.28■□□□□ 0.04
LRCH3Q96II8 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 FAM226B-201ENST00000602508 1490 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 KRT8P28-201ENST00000433288 1390 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 SHMT1P1-201ENST00000419974 1312 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 RN7SKP212-201ENST00000410851 328 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 AL627095.1-201ENST00000414775 321 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 AC073115.1-201ENST00000436056 532 ntTSL 4 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 HNRNPA3P6-201ENST00000472163 1006 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 RN7SL87P-201ENST00000497657 288 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 GOLGA2P8-201ENST00000505201 779 ntBASIC15.27■□□□□ 0.04
LRCH3Q96II8 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC15.27■□□□□ 0.04
LRCH3Q96II8 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LRCH3Q96II8 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms