Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 BCRP2-202ENST00000447763 634 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 KLF2P4-201ENST00000451959 1225 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 BCRP6-201ENST00000510112 632 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 BCRP7-201ENST00000511549 544 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC103988.2-201ENST00000561804 725 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AL353729.2-201ENST00000605859 1249 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AC135782.3-201ENST00000562782 2105 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AL391647.1-201ENST00000395664 511 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AC253576.1-201ENST00000511645 1156 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AP005019.2-201ENST00000615104 511 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 TNFAIP3-211ENST00000621150 1613 ntTSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 AC009474.1-201ENST00000455096 1565 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 BEND3P3-201ENST00000611030 2440 ntBASIC13.37□□□□□ -0.27
DEPDC4Q8N2C3 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms