Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 CA6-205ENST00000480186 1493 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL5A3P25940 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 MIR1226-201ENST00000408658 75 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 RN7SL33P-201ENST00000462543 342 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 AF186996.6-201ENST00000485294 149 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 AC005332.2-201ENST00000590010 930 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 AL031768.1-201ENST00000606542 701 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 KLK8-203ENST00000347619 555 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 SNORA30.1-201ENST00000363193 129 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 AC093106.1-201ENST00000437271 352 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 RN7SL838P-201ENST00000481676 295 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 KRT18P8-201ENST00000581937 1246 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 MIR6125-201ENST00000618986 96 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 AL512324.3-201ENST00000619383 882 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A3P25940 Z82244.2-201ENST00000632196 448 ntBASIC17.1■□□□□ 0.33
COL5A3P25940 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A3P25940 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A3P25940 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A3P25940 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 MST1P2-201ENST00000457982 2291 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A3P25940 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL5A3P25940 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL5A3P25940 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL5A3P25940 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 RN7SKP255-201ENST00000363442 313 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 RN7SKP203-201ENST00000363618 332 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 RN7SKP71-201ENST00000364558 318 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 7SK.1-201ENST00000365328 331 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 COQ4-202ENST00000372875 928 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
COL5A3P25940 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL5A3P25940 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A3P25940 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC17.09■□□□□ 0.33
COL5A3P25940 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A3P25940 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC17.09■□□□□ 0.33
COL5A3P25940 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A3P25940 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A3P25940 ABCD1P3-201ENST00000562927 605 ntBASIC17.09■□□□□ 0.33
COL5A3P25940 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A3P25940 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A3P25940 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A3P25940 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC17.08■□□□□ 0.33
COL5A3P25940 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC17.08■□□□□ 0.33
COL5A3P25940 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A3P25940 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.08■□□□□ 0.33
COL5A3P25940 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC17.08■□□□□ 0.32
COL5A3P25940 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL5A3P25940 RPL3P9-201ENST00000463217 1183 ntBASIC17.08■□□□□ 0.32
COL5A3P25940 AC104759.1-201ENST00000559109 939 ntBASIC17.08■□□□□ 0.32
COL5A3P25940 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC17.08■□□□□ 0.32
COL5A3P25940 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A3P25940 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms