Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
BDNFP23560 AL157996.1-201ENST00000624684 2299 ntBASIC14.93□□□□□ -0.02
BDNFP23560 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 HLA-DMA-203ENST00000395305 777 ntBASIC14.93□□□□□ -0.02
BDNFP23560 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 FXNP2-201ENST00000411625 547 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AL512306.1-201ENST00000432698 848 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AC098935.1-201ENST00000446057 611 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.93□□□□□ -0.02
BDNFP23560 AC130709.1-201ENST00000484779 1212 ntBASIC14.93□□□□□ -0.02
BDNFP23560 SLC25A15P3-201ENST00000505530 290 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AP002803.1-201ENST00000528836 498 ntBASIC14.93□□□□□ -0.02
BDNFP23560 KLF17P1-201ENST00000547105 1126 ntBASIC14.93□□□□□ -0.02
BDNFP23560 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 AL031713.1-201ENST00000564813 661 ntBASIC14.93□□□□□ -0.02
BDNFP23560 MIR4722-201ENST00000578292 60 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.93□□□□□ -0.02
BDNFP23560 SPCS2P2-201ENST00000603270 608 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AC087045.2-201ENST00000606279 1003 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AC018635.2-201ENST00000608625 364 ntBASIC14.93□□□□□ -0.02
BDNFP23560 AC087392.5-201ENST00000612517 489 ntBASIC14.93□□□□□ -0.02
BDNFP23560 MIR6842-201ENST00000612539 65 ntBASIC14.93□□□□□ -0.02
BDNFP23560 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.93□□□□□ -0.02
BDNFP23560 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 AC068760.1-201ENST00000493579 1953 ntBASIC14.93□□□□□ -0.02
BDNFP23560 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
BDNFP23560 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
BDNFP23560 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 AC090643.2-201ENST00000623442 2029 ntBASIC14.92□□□□□ -0.02
BDNFP23560 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.92□□□□□ -0.02
BDNFP23560 ERP29P1-201ENST00000442902 706 ntBASIC14.92□□□□□ -0.02
BDNFP23560 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.92□□□□□ -0.02
BDNFP23560 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.92□□□□□ -0.02
BDNFP23560 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 AC135983.4-201ENST00000564116 1262 ntBASIC14.92□□□□□ -0.02
BDNFP23560 RPL17P45-201ENST00000586289 509 ntBASIC14.92□□□□□ -0.02
BDNFP23560 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.92□□□□□ -0.02
BDNFP23560 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 AL139158.3-201ENST00000641212 1562 ntBASIC14.92□□□□□ -0.02
BDNFP23560 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.92□□□□□ -0.02
BDNFP23560 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.92□□□□□ -0.02
BDNFP23560 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.92□□□□□ -0.02
BDNFP23560 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
BDNFP23560 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
BDNFP23560 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
BDNFP23560 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.91□□□□□ -0.02
BDNFP23560 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
BDNFP23560 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BDNFP23560 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 294.3 ms