Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MICA-210ENST00000616296 2260 ntTSL 5 BASIC11.04□□□□□ -0.64
CXCL1P09341 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 DRC7-203ENST00000394337 2906 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 SLC39A13-204ENST00000524928 3553 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 AC096564.1-201ENST00000499098 2810 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 RPL37AP1-201ENST00000412502 279 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.03□□□□□ -0.64
CXCL1P09341 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.03□□□□□ -0.64
CXCL1P09341 YBX1P5-201ENST00000509441 847 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC11.03□□□□□ -0.64
CXCL1P09341 GLI4-203ENST00000517468 963 ntTSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC11.03□□□□□ -0.64
CXCL1P09341 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 AL512361.1-201ENST00000554200 418 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 AC010336.2-201ENST00000564226 506 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 AC051619.7-201ENST00000568314 623 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 AC005829.1-201ENST00000570002 483 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC11.03□□□□□ -0.64
CXCL1P09341 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 DYNC1I1-204ENST00000437599 2895 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 OTUD6B-201ENST00000285420 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC11.03□□□□□ -0.64
CXCL1P09341 DIDO1-202ENST00000354665 2707 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 SLC25A13-202ENST00000416240 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 AL136172.1-201ENST00000598590 1394 ntBASIC11.03□□□□□ -0.64
CXCL1P09341 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
CXCL1P09341 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CXCL1P09341 AL022313.4-201ENST00000562756 2046 ntBASIC11.02□□□□□ -0.64
CXCL1P09341 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 SMIM21-202ENST00000579022 1834 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
CXCL1P09341 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
CXCL1P09341 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
CXCL1P09341 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC11.02□□□□□ -0.64
CXCL1P09341 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC11.02□□□□□ -0.64
CXCL1P09341 FAM184A-211ENST00000521531 3244 ntTSL 5 BASIC11.02□□□□□ -0.64
CXCL1P09341 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CXCL1P09341 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC11.02□□□□□ -0.64
CXCL1P09341 CSNK1G1-209ENST00000634811 2592 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
CXCL1P09341 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 TP53TG5-201ENST00000372726 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 MRVI1-209ENST00000531107 2887 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
CXCL1P09341 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 CD82-202ENST00000342935 967 ntTSL 5 BASIC11.02□□□□□ -0.65
CXCL1P09341 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.02□□□□□ -0.65
CXCL1P09341 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
CXCL1P09341 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC11.02□□□□□ -0.65
CXCL1P09341 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 AC023141.5-201ENST00000458585 616 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC11.02□□□□□ -0.65
CXCL1P09341 PGAM5P1-201ENST00000518923 814 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 AC092337.1-201ENST00000568699 1129 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC11.02□□□□□ -0.65
CXCL1P09341 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC11.02□□□□□ -0.65
CXCL1P09341 5S_rRNA.22-201ENST00000614916 106 ntBASIC11.02□□□□□ -0.65
CXCL1P09341 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.02□□□□□ -0.65
CXCL1P09341 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CXCL1P09341 WBP1L-202ENST00000448841 4085 ntAPPRIS ALT1 TSL 2 BASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms