Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 RNA5SP359-201ENST00000364838 113 ntBASIC14.92□□□□□ -0.02
APOEP02649 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
APOEP02649 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
APOEP02649 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 SLC25A24P2-201ENST00000415059 510 ntBASIC14.92□□□□□ -0.02
APOEP02649 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
APOEP02649 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 IGHJ2P-201ENST00000454480 60 ntBASIC14.92□□□□□ -0.02
APOEP02649 POU5F1P2-201ENST00000521750 823 ntBASIC14.92□□□□□ -0.02
APOEP02649 AC024681.1-201ENST00000521917 487 ntBASIC14.92□□□□□ -0.02
APOEP02649 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.92□□□□□ -0.02
APOEP02649 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
APOEP02649 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.92□□□□□ -0.02
APOEP02649 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.92□□□□□ -0.02
APOEP02649 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
APOEP02649 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.92□□□□□ -0.02
APOEP02649 LINC01165-201ENST00000445190 1623 ntBASIC14.92□□□□□ -0.02
APOEP02649 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
APOEP02649 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.91□□□□□ -0.02
APOEP02649 CCT8L1P-201ENST00000465400 1674 ntBASIC14.91□□□□□ -0.02
APOEP02649 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 USP17L6P-201ENST00000382470 1197 ntBASIC14.91□□□□□ -0.02
APOEP02649 AL133466.1-201ENST00000447582 150 ntBASIC14.91□□□□□ -0.02
APOEP02649 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 RN7SL530P-201ENST00000485097 298 ntBASIC14.91□□□□□ -0.02
APOEP02649 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.91□□□□□ -0.02
APOEP02649 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
APOEP02649 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 CU633904.3-201ENST00000624042 1029 ntBASIC14.91□□□□□ -0.02
APOEP02649 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.91□□□□□ -0.02
APOEP02649 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.91□□□□□ -0.02
APOEP02649 AC138627.1-207ENST00000641560 1006 ntBASIC14.91□□□□□ -0.02
APOEP02649 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.91□□□□□ -0.02
APOEP02649 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
APOEP02649 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.91□□□□□ -0.02
APOEP02649 TUBB8P4-201ENST00000511806 1324 ntBASIC14.91□□□□□ -0.02
APOEP02649 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.9□□□□□ -0.02
APOEP02649 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
APOEP02649 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
APOEP02649 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms