Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZC3H4Q9UPT8 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 KRT8P6-201ENST00000399259 1207 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 VDAC1P11-201ENST00000458323 852 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 GYG1-209ENST00000483267 801 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 MARK2P17-201ENST00000498560 841 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 PRR20FP-201ENST00000603320 180 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC106782.5-201ENST00000616011 337 ntBASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC16.94■□□□□ 0.3
ZC3H4Q9UPT8 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC005912.2-201ENST00000619492 2400 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 LINC00115-201ENST00000473798 1317 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 PHBP10-201ENST00000416467 784 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 SORD2P-201ENST00000558556 1069 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AL049840.2-201ENST00000602722 535 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 AC112220.4-201ENST00000604982 1263 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 Z82244.2-201ENST00000632196 448 ntBASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms