Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFB2P1-201ENST00000506966 295 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC092284.1-201ENST00000511386 1289 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 KRT18P45-201ENST00000515347 1333 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC104115.1-201ENST00000484005 623 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 FOS-205ENST00000555242 629 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AL031577.1-201ENST00000339867 399 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 SRSF9P1-201ENST00000399149 530 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AP001331.1-201ENST00000413008 1015 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 IGHV7-56-201ENST00000518372 351 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 RPL30-213ENST00000523172 274 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AP003170.2-201ENST00000544730 786 ntBASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 LINC02228-204ENST00000642115 2962 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 DLX4-206ENST00000611342 1662 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 LINC00552-201ENST00000625151 2579 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CTNNBL1-203ENST00000373473 1493 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 STK16-202ENST00000409260 1493 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 MIR766-201ENST00000390223 111 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 FAM153C-208ENST00000511189 926 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AL137028.2-201ENST00000614601 256 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 AL158032.2-201ENST00000616818 195 ntBASIC13.54□□□□□ -0.24
VPS13AQ96RL7 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC13.54□□□□□ -0.24
VPS13AQ96RL7 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 IMPDH1P5-201ENST00000439688 1540 ntBASIC13.53□□□□□ -0.24
VPS13AQ96RL7 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
VPS13AQ96RL7 NAA10-205ENST00000393712 908 ntTSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms