Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 RPS6P14-201ENST00000425165 719 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 ELOCP6-201ENST00000429066 328 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC007919.2-201ENST00000444110 511 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 ELOCP12-201ENST00000458706 328 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC114550.1-202ENST00000522661 643 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AP003040.1-201ENST00000532044 1024 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC145285.5-201ENST00000562217 361 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 CDC37P2-201ENST00000562287 1029 ntBASIC15.3■□□□□ 0.04
LRCH3Q96II8 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LRCH3Q96II8 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
LRCH3Q96II8 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC019109.1-201ENST00000401725 1874 ntBASIC15.29■□□□□ 0.04
LRCH3Q96II8 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC106785.2-201ENST00000564385 1319 ntBASIC15.29■□□□□ 0.04
LRCH3Q96II8 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 MIR1226-201ENST00000408658 75 ntBASIC15.29■□□□□ 0.04
LRCH3Q96II8 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 TMF1P1-201ENST00000576058 373 ntBASIC15.29■□□□□ 0.04
LRCH3Q96II8 NAT9-204ENST00000578822 839 ntTSL 3 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LRCH3Q96II8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LRCH3Q96II8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.28■□□□□ 0.04
LRCH3Q96II8 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LRCH3Q96II8 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms