Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 KRT18P62-201ENST00000446618 1287 ntBASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 BPIFB5P-201ENST00000457066 1099 ntBASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 AC063952.3-201ENST00000467756 308 ntBASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 GOLGA2P8-201ENST00000505201 779 ntBASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 MIR566-201ENST00000385187 94 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 MIR1301-201ENST00000408518 82 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 OR51A9P-201ENST00000422578 911 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC026470.1-201ENST00000478038 846 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 ALG1L3P-201ENST00000503331 765 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC100858.1-201ENST00000514059 1228 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 CYP4F36P-201ENST00000589193 186 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC006548.2-201ENST00000605217 529 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC097376.2-205ENST00000610159 5334 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 AL109809.1-201ENST00000418979 1367 ntBASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.6□□□□□ -0.07
NPAS3Q8IXF0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AL365181.1-201ENST00000564032 1828 ntBASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AP000354.1-201ENST00000396982 456 ntBASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 FAM86KP-201ENST00000509817 987 ntBASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC106047.2-201ENST00000511723 743 ntBASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 AC132825.4-202ENST00000578792 434 ntBASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NPAS3Q8IXF0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms