Protein–RNA interactions for Protein: Q6NXT2

H3F3C, Histone H3.3C, humanhuman

Predictions only

Length 135 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3CQ6NXT2 MIR645-201ENST00000385283 94 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AC008267.1-201ENST00000474858 1069 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 ALG1L13P-202ENST00000519320 584 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AP002803.1-201ENST00000528836 498 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 IQSEC3P1-201ENST00000538799 536 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AL512310.5-201ENST00000551999 515 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 NDUFB10P1-201ENST00000567319 521 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 RN7SL665P-201ENST00000578793 300 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AC011491.1-203ENST00000637688 543 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 COL6A4P2-202ENST00000504443 2753 ntBASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.17□□□□□ -0.3
H3F3CQ6NXT2 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 SHMT1P1-201ENST00000419974 1312 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 CICP17-201ENST00000418553 2377 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 HLA-DMA-203ENST00000395305 777 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 RPSAP31-201ENST00000416648 895 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 RPL7P35-201ENST00000446943 740 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 KRT18P15-201ENST00000458108 1291 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 RPL18AP8-201ENST00000486071 528 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 MRPL22P1-201ENST00000505398 616 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 NPM1P43-201ENST00000558669 786 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 MIR6842-201ENST00000612539 65 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 RPL13AP3-202ENST00000494676 1473 ntBASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3CQ6NXT2 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3CQ6NXT2 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms