Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 SLC25A24P2-201ENST00000415059 510 ntBASIC12.4□□□□□ -0.42
UBA52P62987 CALR4P-201ENST00000431943 946 ntBASIC12.4□□□□□ -0.42
UBA52P62987 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.4□□□□□ -0.42
UBA52P62987 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.4□□□□□ -0.42
UBA52P62987 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 REXO1L4P-201ENST00000605109 1937 ntBASIC12.4□□□□□ -0.42
UBA52P62987 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.4□□□□□ -0.42
UBA52P62987 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
UBA52P62987 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
UBA52P62987 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
UBA52P62987 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
UBA52P62987 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
UBA52P62987 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
UBA52P62987 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 AL365181.3-201ENST00000605886 3222 ntBASIC12.39□□□□□ -0.43
UBA52P62987 KRT8P35-201ENST00000483942 1338 ntBASIC12.39□□□□□ -0.43
UBA52P62987 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
UBA52P62987 POM121L14P-201ENST00000406100 1558 ntBASIC12.39□□□□□ -0.43
UBA52P62987 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 RHPN1-AS1-201ENST00000518049 1918 ntBASIC12.39□□□□□ -0.43
UBA52P62987 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 AC106818.1-201ENST00000623223 3242 ntBASIC12.39□□□□□ -0.43
UBA52P62987 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.39□□□□□ -0.43
UBA52P62987 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.39□□□□□ -0.43
UBA52P62987 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.39□□□□□ -0.43
UBA52P62987 AC007969.1-201ENST00000433675 447 ntBASIC12.39□□□□□ -0.43
UBA52P62987 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.39□□□□□ -0.43
UBA52P62987 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.39□□□□□ -0.43
UBA52P62987 MIR4741-201ENST00000579822 90 ntBASIC12.39□□□□□ -0.43
UBA52P62987 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 AC145423.3-201ENST00000615987 467 ntBASIC12.39□□□□□ -0.43
UBA52P62987 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 AL008638.5-201ENST00000623814 1298 ntBASIC12.39□□□□□ -0.43
UBA52P62987 AC244452.3-201ENST00000636814 210 ntBASIC12.39□□□□□ -0.43
UBA52P62987 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.39□□□□□ -0.43
UBA52P62987 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
UBA52P62987 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.39□□□□□ -0.43
UBA52P62987 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms