Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC15.07■□□□□ 0
LIG3P49916 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
LIG3P49916 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LIG3P49916 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
LIG3P49916 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.07■□□□□ 0
LIG3P49916 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC15.07■□□□□ 0
LIG3P49916 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
LIG3P49916 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.07■□□□□ 0
LIG3P49916 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.07■□□□□ 0
LIG3P49916 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 AL355994.2-201ENST00000447882 704 ntBASIC15.07■□□□□ 0
LIG3P49916 AC022447.6-201ENST00000515522 438 ntBASIC15.07■□□□□ 0
LIG3P49916 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.07■□□□□ 0
LIG3P49916 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.07■□□□□ 0
LIG3P49916 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.07■□□□□ 0
LIG3P49916 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.07■□□□□ 0
LIG3P49916 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.07■□□□□ 0
LIG3P49916 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.07■□□□□ 0
LIG3P49916 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.07■□□□□ 0
LIG3P49916 OR10B1P-201ENST00000601666 907 ntBASIC15.07■□□□□ 0
LIG3P49916 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 AC138466.3-201ENST00000619983 221 ntBASIC15.07■□□□□ 0
LIG3P49916 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.07■□□□□ 0
LIG3P49916 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LIG3P49916 TUBB1P2-201ENST00000422712 1306 ntBASIC15.07■□□□□ 0
LIG3P49916 TUBB1P1-201ENST00000503144 1300 ntBASIC15.07■□□□□ 0
LIG3P49916 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LIG3P49916 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC15.07■□□□□ 0
LIG3P49916 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LIG3P49916 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LIG3P49916 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
LIG3P49916 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
LIG3P49916 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC15.06■□□□□ 0
LIG3P49916 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LIG3P49916 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LIG3P49916 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LIG3P49916 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.06■□□□□ 0
LIG3P49916 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 FTLP10-202ENST00000505798 471 ntBASIC15.06■□□□□ 0
LIG3P49916 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.06■□□□□ 0
LIG3P49916 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
LIG3P49916 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.06■□□□□ 0
LIG3P49916 MIR4741-201ENST00000579822 90 ntBASIC15.06■□□□□ 0
LIG3P49916 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.06■□□□□ 0
LIG3P49916 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.06■□□□□ 0
LIG3P49916 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.06■□□□□ 0
LIG3P49916 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
LIG3P49916 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.06■□□□□ 0
LIG3P49916 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.06■□□□□ 0
LIG3P49916 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
LIG3P49916 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
LIG3P49916 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LIG3P49916 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 322.8 ms