Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.74□□□□□ -0.53
CDX1P47902 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
CDX1P47902 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 REXO1L4P-201ENST00000605109 1937 ntBASIC11.74□□□□□ -0.53
CDX1P47902 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.74□□□□□ -0.53
CDX1P47902 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CDX1P47902 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 AC015819.3-201ENST00000624305 2674 ntBASIC11.73□□□□□ -0.53
CDX1P47902 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 FAM8A4P-201ENST00000435433 1213 ntBASIC11.73□□□□□ -0.53
CDX1P47902 ANKRD30BP2-201ENST00000435744 1610 ntBASIC11.73□□□□□ -0.53
CDX1P47902 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 AL590640.2-201ENST00000457038 527 ntBASIC11.73□□□□□ -0.53
CDX1P47902 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC11.73□□□□□ -0.53
CDX1P47902 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC11.73□□□□□ -0.53
CDX1P47902 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.73□□□□□ -0.53
CDX1P47902 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.73□□□□□ -0.53
CDX1P47902 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC11.73□□□□□ -0.53
CDX1P47902 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 ECM1P1-201ENST00000604092 1279 ntBASIC11.73□□□□□ -0.53
CDX1P47902 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.73□□□□□ -0.53
CDX1P47902 AP000437.1-201ENST00000624057 2085 ntBASIC11.73□□□□□ -0.53
CDX1P47902 AL357140.3-201ENST00000639753 1983 ntBASIC11.73□□□□□ -0.53
CDX1P47902 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
CDX1P47902 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CDX1P47902 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 AC012531.1-201ENST00000562848 2680 ntBASIC11.73□□□□□ -0.53
CDX1P47902 SUPT20HL1-201ENST00000436466 2618 ntBASIC11.73□□□□□ -0.53
CDX1P47902 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
CDX1P47902 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
CDX1P47902 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CDX1P47902 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
CDX1P47902 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
CDX1P47902 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CDX1P47902 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms