Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 FMO6P-201ENST00000236166 1620 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
PTPN9P43378 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.71□□□□□ -0.05
PTPN9P43378 RPSAP15-201ENST00000448168 861 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 RN7SL11P-201ENST00000471305 293 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.71□□□□□ -0.05
PTPN9P43378 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 AC024681.1-201ENST00000521917 487 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.71□□□□□ -0.05
PTPN9P43378 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.71□□□□□ -0.05
PTPN9P43378 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 MIR6787-201ENST00000616675 61 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 KRT8P31-201ENST00000504812 1408 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PTPN9P43378 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PTPN9P43378 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC14.71□□□□□ -0.05
PTPN9P43378 AC073548.1-201ENST00000624088 1882 ntBASIC14.71□□□□□ -0.05
PTPN9P43378 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.71□□□□□ -0.06
PTPN9P43378 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
PTPN9P43378 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PTPN9P43378 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 AC025183.3-201ENST00000623526 1482 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.7□□□□□ -0.06
PTPN9P43378 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PTPN9P43378 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PTPN9P43378 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTPN9P43378 AL391647.1-201ENST00000395664 511 ntBASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms