Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCA1P38398 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCA1P38398 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 VWA3B-221ENST00000614454 1542 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
BRCA1P38398 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 AL138885.2-201ENST00000420389 539 ntTSL 3 BASIC16.49■□□□□ 0.23
BRCA1P38398 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 FPGT-205ENST00000482102 561 ntTSL 4 BASIC16.49■□□□□ 0.23
BRCA1P38398 PIGCP1-201ENST00000527583 895 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 FP325317.1-201ENST00000539936 1042 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC16.49■□□□□ 0.23
BRCA1P38398 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 AC239600.1-201ENST00000603201 462 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 AL133551.1-201ENST00000610279 1222 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 FKBP4P1-201ENST00000507284 1347 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 FAM90A27P-201ENST00000593323 1370 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 FAM90A28P-202ENST00000597191 1374 ntBASIC16.49■□□□□ 0.23
BRCA1P38398 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCA1P38398 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCA1P38398 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCA1P38398 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCA1P38398 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC16.48■□□□□ 0.23
BRCA1P38398 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC16.48■□□□□ 0.23
BRCA1P38398 AC018868.2-201ENST00000559655 1259 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 CYP4F10P-201ENST00000589560 752 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 AL117379.1-201ENST00000619319 677 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
BRCA1P38398 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC16.48■□□□□ 0.23
BRCA1P38398 PMM2-216ENST00000569958 698 ntTSL 2 BASIC16.48■□□□□ 0.23
BRCA1P38398 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BRCA1P38398 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC16.48■□□□□ 0.23
BRCA1P38398 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC16.48■□□□□ 0.23
BRCA1P38398 AC091736.1-201ENST00000609370 305 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 ZSCAN5DP-201ENST00000600684 1488 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCA1P38398 AC124319.4-201ENST00000622931 2161 ntBASIC16.48■□□□□ 0.23
BRCA1P38398 AC012617.1-204ENST00000586340 2305 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 AP001267.2-201ENST00000532619 2086 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 DDC-212ENST00000615193 1674 ntTSL 3 BASIC16.47■□□□□ 0.23
BRCA1P38398 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
BRCA1P38398 COQ4-202ENST00000372875 928 ntTSL 2 BASIC16.47■□□□□ 0.23
BRCA1P38398 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 PHBP3-201ENST00000412562 819 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC16.47■□□□□ 0.23
BRCA1P38398 RPL13AP5-201ENST00000439189 612 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 AC012066.1-201ENST00000439252 694 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 HNRNPA1P55-201ENST00000505935 955 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 HNRNPA1P4-201ENST00000509706 756 ntBASIC16.47■□□□□ 0.23
BRCA1P38398 ST3GAL1P1-201ENST00000513810 1014 ntBASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms