Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC13.21□□□□□ -0.29
COL5A1P20908 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.21□□□□□ -0.29
COL5A1P20908 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC13.21□□□□□ -0.29
COL5A1P20908 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 AL050341.2-201ENST00000567508 1541 ntBASIC13.21□□□□□ -0.3
COL5A1P20908 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.21□□□□□ -0.3
COL5A1P20908 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL5A1P20908 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
COL5A1P20908 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 AL121949.3-201ENST00000406684 385 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 AL359092.2-201ENST00000423330 585 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 CCND3P1-201ENST00000438347 580 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 HLA-W-207ENST00000439514 771 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC13.2□□□□□ -0.3
COL5A1P20908 AC092910.2-201ENST00000491262 348 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC13.2□□□□□ -0.3
COL5A1P20908 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 AC106782.5-201ENST00000616011 337 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
COL5A1P20908 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 AL513477.1-201ENST00000602865 2407 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
COL5A1P20908 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 MED15P3-201ENST00000413613 326 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 SDCBP2P1-201ENST00000416115 614 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 AC005077.3-201ENST00000449614 213 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 SNRPD2P2-201ENST00000473818 333 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 RPL29P2-202ENST00000498671 657 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 NDUFB2P1-201ENST00000506966 295 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC13.2□□□□□ -0.3
COL5A1P20908 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC13.2□□□□□ -0.3
COL5A1P20908 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.2□□□□□ -0.3
COL5A1P20908 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
COL5A1P20908 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 AC011477.7-201ENST00000617163 1440 ntBASIC13.2□□□□□ -0.3
COL5A1P20908 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL5A1P20908 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.19□□□□□ -0.3
COL5A1P20908 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 AC027601.5-201ENST00000624065 2482 ntBASIC13.19□□□□□ -0.3
COL5A1P20908 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 179.6 ms