Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 MIR769-201ENST00000390225 118 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 ACTG1P2-201ENST00000415776 1125 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 CMC1-204ENST00000423894 549 ntTSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 ACTG1P11-201ENST00000425411 1125 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC12.73□□□□□ -0.37
H3F3AP84243 AC006335.1-201ENST00000445200 547 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 DUX4L50-201ENST00000455245 715 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC12.73□□□□□ -0.37
H3F3AP84243 POU5F1P2-201ENST00000521750 823 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 AC090857.1-201ENST00000527400 390 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 KRT8P1-201ENST00000557533 1207 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
H3F3AP84243 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 AC107918.4-201ENST00000641966 3141 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 AC015909.3-201ENST00000572855 1794 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 AC005077.2-201ENST00000449786 690 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.72□□□□□ -0.37
H3F3AP84243 GOLGA2P8-201ENST00000505201 779 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 AC024681.1-201ENST00000521917 487 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.72□□□□□ -0.37
H3F3AP84243 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
H3F3AP84243 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 ACTG1P17-201ENST00000558391 1119 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 GOLGA8EP-201ENST00000530246 1959 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 BEND3P1-201ENST00000421591 1944 ntBASIC12.72□□□□□ -0.37
H3F3AP84243 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
H3F3AP84243 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.72□□□□□ -0.37
H3F3AP84243 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
H3F3AP84243 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
H3F3AP84243 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
H3F3AP84243 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.71□□□□□ -0.37
H3F3AP84243 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
H3F3AP84243 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
H3F3AP84243 AC008132.1-202ENST00000342005 1389 ntBASIC12.71□□□□□ -0.37
H3F3AP84243 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.71□□□□□ -0.37
H3F3AP84243 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.71□□□□□ -0.37
H3F3AP84243 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
H3F3AP84243 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
H3F3AP84243 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
H3F3AP84243 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
H3F3AP84243 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.37
H3F3AP84243 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
H3F3AP84243 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms