Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 AC034205.3-201ENST00000603595 1376 ntBASIC16.44■□□□□ 0.22
COL4A5P29400 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL4A5P29400 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL4A5P29400 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 SNORD23-201ENST00000408876 110 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A5P29400 SLC25A15P1-201ENST00000456738 342 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 RN7SL33P-201ENST00000462543 342 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A5P29400 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL4A5P29400 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A5P29400 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 AL031590.1-202ENST00000641466 1737 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A5P29400 AC093106.1-201ENST00000437271 352 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 RPL35P1-201ENST00000450819 370 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 AL450346.2-201ENST00000495602 1024 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 KRT18P42-201ENST00000505048 1255 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC16.43■□□□□ 0.22
COL4A5P29400 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A5P29400 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
COL4A5P29400 TPST2P1-201ENST00000564073 1102 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC16.43■□□□□ 0.22
COL4A5P29400 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 Z82244.2-201ENST00000632196 448 ntBASIC16.43■□□□□ 0.22
COL4A5P29400 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.43■□□□□ 0.22
COL4A5P29400 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL4A5P29400 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A5P29400 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
COL4A5P29400 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
COL4A5P29400 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL4A5P29400 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
COL4A5P29400 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL4A5P29400 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC16.42■□□□□ 0.22
COL4A5P29400 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC16.42■□□□□ 0.22
COL4A5P29400 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 RN7SL794P-201ENST00000469816 280 ntBASIC16.42■□□□□ 0.22
COL4A5P29400 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 PIGCP1-201ENST00000527583 895 ntBASIC16.42■□□□□ 0.22
COL4A5P29400 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC16.42■□□□□ 0.22
COL4A5P29400 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC16.42■□□□□ 0.22
COL4A5P29400 AC009812.1-201ENST00000605948 1059 ntBASIC16.42■□□□□ 0.22
COL4A5P29400 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC16.42■□□□□ 0.22
COL4A5P29400 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.42■□□□□ 0.22
COL4A5P29400 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL4A5P29400 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms