Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC135782.3-201ENST00000562782 2105 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 KRT18P15-201ENST00000458108 1291 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RN7SL818P-201ENST00000485099 259 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RN7SL725P-201ENST00000606439 259 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 RN7SL8P-201ENST00000461771 266 ntBASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 AC005357.2-202ENST00000590507 1060 ntBASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 AC100757.4-201ENST00000626934 759 ntBASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHROOM3Q8TF72 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 RN7SL665P-201ENST00000578793 300 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC073548.1-201ENST00000624088 1882 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 AC105206.1-202ENST00000314927 2368 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 PPT1-213ENST00000641319 2388 ntBASIC14.43□□□□□ -0.1
SHROOM3Q8TF72 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms