Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 AC025183.3-201ENST00000623526 1482 ntBASIC14.12□□□□□ -0.15
COL6A2P12110 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL6A2P12110 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 SALL4P6-201ENST00000429385 1691 ntBASIC14.12□□□□□ -0.15
COL6A2P12110 AC131212.3-201ENST00000624087 4219 ntBASIC14.12□□□□□ -0.15
COL6A2P12110 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A2P12110 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A2P12110 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A2P12110 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.12□□□□□ -0.15
COL6A2P12110 JPT2-214ENST00000569765 782 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.12□□□□□ -0.15
COL6A2P12110 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL6A2P12110 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL6A2P12110 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.12□□□□□ -0.15
COL6A2P12110 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL6A2P12110 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.11□□□□□ -0.15
COL6A2P12110 AC100850.1-201ENST00000506768 649 ntBASIC14.11□□□□□ -0.15
COL6A2P12110 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
COL6A2P12110 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A2P12110 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A2P12110 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms