Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MRE11P49959 TRIM80P-201ENST00000455685 2848 ntBASIC16.75■□□□□ 0.27
MRE11P49959 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.75■□□□□ 0.27
MRE11P49959 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
MRE11P49959 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.75■□□□□ 0.27
MRE11P49959 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
MRE11P49959 KRT43P-201ENST00000434019 910 ntBASIC16.75■□□□□ 0.27
MRE11P49959 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 AC004066.1-201ENST00000502488 802 ntBASIC16.75■□□□□ 0.27
MRE11P49959 DOC2GP-202ENST00000514950 1163 ntBASIC16.75■□□□□ 0.27
MRE11P49959 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.75■□□□□ 0.27
MRE11P49959 TEX28P1-201ENST00000613479 1221 ntBASIC16.75■□□□□ 0.27
MRE11P49959 TEX28P2-201ENST00000617764 1221 ntBASIC16.75■□□□□ 0.27
MRE11P49959 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.75■□□□□ 0.27
MRE11P49959 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.75■□□□□ 0.27
MRE11P49959 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.75■□□□□ 0.27
MRE11P49959 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MRE11P49959 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 GHET1-201ENST00000627071 1906 ntBASIC16.74■□□□□ 0.27
MRE11P49959 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
MRE11P49959 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC16.74■□□□□ 0.27
MRE11P49959 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
MRE11P49959 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 HLA-K-203ENST00000430151 1046 ntBASIC16.74■□□□□ 0.27
MRE11P49959 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.74■□□□□ 0.27
MRE11P49959 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.74■□□□□ 0.27
MRE11P49959 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.74■□□□□ 0.27
MRE11P49959 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.74■□□□□ 0.27
MRE11P49959 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.74■□□□□ 0.27
MRE11P49959 MIR4706-201ENST00000582134 82 ntBASIC16.74■□□□□ 0.27
MRE11P49959 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
MRE11P49959 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.74■□□□□ 0.27
MRE11P49959 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.74■□□□□ 0.27
MRE11P49959 AC012531.1-201ENST00000562848 2680 ntBASIC16.74■□□□□ 0.27
MRE11P49959 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC16.74■□□□□ 0.27
MRE11P49959 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MRE11P49959 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
MRE11P49959 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC16.73■□□□□ 0.27
MRE11P49959 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
MRE11P49959 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MRE11P49959 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
MRE11P49959 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 SPDYE17-201ENST00000412399 783 ntBASIC16.73■□□□□ 0.27
MRE11P49959 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.73■□□□□ 0.27
MRE11P49959 KRT18P43-201ENST00000469825 1281 ntBASIC16.73■□□□□ 0.27
MRE11P49959 RNA5SP412-201ENST00000516234 123 ntBASIC16.73■□□□□ 0.27
MRE11P49959 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.73■□□□□ 0.27
MRE11P49959 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.73■□□□□ 0.27
MRE11P49959 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MRE11P49959 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms