Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 AL022323.5-201ENST00000624101 2059 ntBASIC13.67□□□□□ -0.22
MSX2P35548 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX2P35548 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
MSX2P35548 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX2P35548 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 PDIA3P1-201ENST00000471856 1510 ntBASIC13.66□□□□□ -0.22
MSX2P35548 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
MSX2P35548 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 BX842568.4-201ENST00000421222 227 ntBASIC13.66□□□□□ -0.22
MSX2P35548 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 MESTP3-201ENST00000503460 968 ntBASIC13.66□□□□□ -0.22
MSX2P35548 KRT18P8-201ENST00000581937 1246 ntBASIC13.66□□□□□ -0.22
MSX2P35548 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX2P35548 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX2P35548 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX2P35548 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
MSX2P35548 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX2P35548 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 GHET1-201ENST00000627071 1906 ntBASIC13.65□□□□□ -0.22
MSX2P35548 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 AP006288.1-201ENST00000446065 395 ntBASIC13.65□□□□□ -0.22
MSX2P35548 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX2P35548 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX2P35548 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 DUX4L27-201ENST00000554796 1261 ntBASIC13.65□□□□□ -0.22
MSX2P35548 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.65□□□□□ -0.22
MSX2P35548 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.65□□□□□ -0.22
MSX2P35548 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.65□□□□□ -0.22
MSX2P35548 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.65□□□□□ -0.22
MSX2P35548 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.65□□□□□ -0.22
MSX2P35548 AL390754.1-201ENST00000619088 582 ntBASIC13.65□□□□□ -0.22
MSX2P35548 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.65□□□□□ -0.22
MSX2P35548 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms