Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 LINC02199-201ENST00000506655 2702 ntBASIC18.05■□□□□ 0.48
RXRBP28702 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 APOC2-201ENST00000252490 727 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 PGAM1P10-201ENST00000402426 761 ntBASIC18.05■□□□□ 0.48
RXRBP28702 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 APRT-202ENST00000426324 664 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 BICD1P1-201ENST00000457832 1222 ntBASIC18.05■□□□□ 0.48
RXRBP28702 AC012100.1-201ENST00000470304 282 ntBASIC18.05■□□□□ 0.48
RXRBP28702 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 GOLGA2-210ENST00000490628 428 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 TPI1P2-201ENST00000491343 752 ntBASIC18.05■□□□□ 0.48
RXRBP28702 DIS3L2P1-201ENST00000509197 559 ntBASIC18.05■□□□□ 0.48
RXRBP28702 HNRNPA1P4-201ENST00000509706 756 ntBASIC18.05■□□□□ 0.48
RXRBP28702 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC18.05■□□□□ 0.48
RXRBP28702 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC18.05■□□□□ 0.48
RXRBP28702 MDC1-209ENST00000613547 830 ntTSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 AC099795.2-201ENST00000639582 440 ntBASIC18.05■□□□□ 0.48
RXRBP28702 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 NKILA-202ENST00000614771 2598 ntBASIC18.05■□□□□ 0.48
RXRBP28702 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 AL118508.1-201ENST00000613502 2345 ntBASIC18.05■□□□□ 0.48
RXRBP28702 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 AL049542.1-201ENST00000430231 278 ntBASIC18.04■□□□□ 0.48
RXRBP28702 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 AC096919.1-201ENST00000472730 652 ntBASIC18.04■□□□□ 0.48
RXRBP28702 RPL29P2-202ENST00000498671 657 ntBASIC18.04■□□□□ 0.48
RXRBP28702 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC18.04■□□□□ 0.48
RXRBP28702 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC18.04■□□□□ 0.48
RXRBP28702 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC18.04■□□□□ 0.48
RXRBP28702 AL109983.1-201ENST00000603234 646 ntBASIC18.04■□□□□ 0.48
RXRBP28702 AL589743.3-201ENST00000604121 517 ntBASIC18.04■□□□□ 0.48
RXRBP28702 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
RXRBP28702 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RXRBP28702 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RXRBP28702 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 SRSF10-205ENST00000374452 1194 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 CDA-201ENST00000375071 963 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC18.03■□□□□ 0.48
RXRBP28702 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC18.03■□□□□ 0.48
RXRBP28702 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC18.03■□□□□ 0.48
RXRBP28702 GIMD1-201ENST00000507153 654 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RXRBP28702 SNORA74.2-201ENST00000516496 180 ntBASIC18.03■□□□□ 0.48
RXRBP28702 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 AC079601.2-201ENST00000547729 775 ntBASIC18.03■□□□□ 0.48
RXRBP28702 FXYD3-212ENST00000605550 590 ntTSL 4 BASIC18.03■□□□□ 0.48
RXRBP28702 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RXRBP28702 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms