Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 RNVU1-8-201ENST00000364272 125 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 PGAM1P11-201ENST00000416729 680 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 EEF1DP5-201ENST00000431410 772 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 GOLGA6L16P-201ENST00000441780 1299 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 KRT18P37-201ENST00000520711 1282 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.46□□□□□ -0.41
COL8A1P27658 MT2A-202ENST00000561491 581 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC12.46□□□□□ -0.41
COL8A1P27658 GAS7-216ENST00000583882 553 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 PHF23-213ENST00000613632 850 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.46□□□□□ -0.42
COL8A1P27658 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
COL8A1P27658 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.42
COL8A1P27658 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.42
COL8A1P27658 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.46□□□□□ -0.42
COL8A1P27658 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.46□□□□□ -0.42
COL8A1P27658 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL8A1P27658 AGGF1P1-201ENST00000509500 2073 ntBASIC12.46□□□□□ -0.42
COL8A1P27658 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
COL8A1P27658 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 FKBP4P8-201ENST00000610931 1369 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
COL8A1P27658 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 AC008536.3-201ENST00000623282 1599 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
COL8A1P27658 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 LRRIQ3-202ENST00000370909 793 ntTSL 5 BASIC12.45□□□□□ -0.42
COL8A1P27658 GEMIN8P4-201ENST00000380526 729 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 AHCYP3-201ENST00000420053 1279 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 AL080243.1-201ENST00000423293 1060 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 AC136604.1-202ENST00000425471 771 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 ASS1P2-201ENST00000439895 1223 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 AC098934.1-203ENST00000442868 1262 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 AC007688.1-201ENST00000475592 759 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 AC084262.1-201ENST00000567818 751 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 NT5C-204ENST00000578337 582 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC12.45□□□□□ -0.42
COL8A1P27658 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC12.45□□□□□ -0.42
COL8A1P27658 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL8A1P27658 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC12.45□□□□□ -0.42
COL8A1P27658 AC107308.1-201ENST00000615897 301 ntBASIC12.45□□□□□ -0.42
COL8A1P27658 RARS-210ENST00000626454 177 ntTSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms