Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.57□□□□□ -0.08
COL9A1P20849 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC14.57□□□□□ -0.08
COL9A1P20849 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL9A1P20849 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
COL9A1P20849 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
COL9A1P20849 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 AC012513.1-201ENST00000417481 784 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 AC025594.1-201ENST00000469533 543 ntBASIC14.56□□□□□ -0.08
COL9A1P20849 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.56□□□□□ -0.08
COL9A1P20849 AC129507.2-201ENST00000572499 748 ntTSL 3 BASIC14.56□□□□□ -0.08
COL9A1P20849 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.56□□□□□ -0.08
COL9A1P20849 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC14.56□□□□□ -0.08
COL9A1P20849 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC14.56□□□□□ -0.08
COL9A1P20849 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 AC134878.2-201ENST00000620700 1265 ntBASIC14.56□□□□□ -0.08
COL9A1P20849 AC006963.1-201ENST00000624003 1052 ntBASIC14.56□□□□□ -0.08
COL9A1P20849 AC091905.3-201ENST00000624959 234 ntBASIC14.56□□□□□ -0.08
COL9A1P20849 AC097655.1-201ENST00000635075 318 ntBASIC14.56□□□□□ -0.08
COL9A1P20849 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.56□□□□□ -0.08
COL9A1P20849 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.56□□□□□ -0.08
COL9A1P20849 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL9A1P20849 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL9A1P20849 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL9A1P20849 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.55□□□□□ -0.08
COL9A1P20849 SPTLC1P3-201ENST00000403408 259 ntBASIC14.55□□□□□ -0.08
COL9A1P20849 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL9A1P20849 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.55□□□□□ -0.08
COL9A1P20849 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.55□□□□□ -0.08
COL9A1P20849 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.55□□□□□ -0.08
COL9A1P20849 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL9A1P20849 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC14.55□□□□□ -0.08
COL9A1P20849 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC14.55□□□□□ -0.08
COL9A1P20849 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC14.55□□□□□ -0.08
COL9A1P20849 AC082651.2-201ENST00000496833 166 ntBASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms