Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 SURF4-203ENST00000371991 715 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 SERF2-206ENST00000409291 807 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 DDX39AP1-201ENST00000445147 1181 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 AC006529.1-201ENST00000459978 637 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 RN7SKP155-201ENST00000516031 288 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 AC090136.2-201ENST00000517809 420 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 AC013553.1-201ENST00000560906 267 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 USB1-205ENST00000561743 1135 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 COX5A-205ENST00000568517 582 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 AC008972.2-201ENST00000606587 494 ntBASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC187A0A096LP49 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC187A0A096LP49 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC187A0A096LP49 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC187A0A096LP49 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.46□□□□□ -0.26
CCDC187A0A096LP49 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC187A0A096LP49 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AL354702.1-201ENST00000442006 1960 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 OR52M2P-201ENST00000414298 959 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AC092573.1-201ENST00000433054 884 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AC063952.3-201ENST00000467756 308 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 FAM86KP-201ENST00000509817 987 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AL512310.5-201ENST00000551999 515 ntBASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC187A0A096LP49 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms