Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC012618.1-201ENST00000461223 412 ntBASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 HSPA8P5-201ENST00000456928 2069 ntBASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 FRMPD2B-201ENST00000431305 1347 ntBASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC020910.6-201ENST00000623084 1459 ntBASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CU633904.3-201ENST00000624042 1029 ntBASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 AC027601.5-201ENST00000624065 2482 ntBASIC14.21□□□□□ -0.13
TRIM39Q9HCM9 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
TRIM39Q9HCM9 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 CCT8L1P-201ENST00000465400 1674 ntBASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.2□□□□□ -0.14
TRIM39Q9HCM9 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms