Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 MRPL22P1-201ENST00000505398 616 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 GMFG-209ENST00000600322 622 ntTSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC087392.5-201ENST00000612517 489 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC084781.1-201ENST00000613737 656 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 AC005618.3-201ENST00000624928 458 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 HLA-C-210ENST00000640219 976 ntBASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RPAP1Q9BWH6 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 AC092580.1-201ENST00000433998 658 ntBASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 DUX4L50-201ENST00000455245 715 ntBASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 MIR6858-201ENST00000620733 67 ntBASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.23■□□□□ 0.35
RPAP1Q9BWH6 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 AP002353.1-201ENST00000528257 1599 ntBASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 AL157996.1-201ENST00000624684 2299 ntBASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RPAP1Q9BWH6 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC17.21■□□□□ 0.35
RPAP1Q9BWH6 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RPAP1Q9BWH6 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RPAP1Q9BWH6 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
RPAP1Q9BWH6 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RPAP1Q9BWH6 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms