Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 KRT8P43-201ENST00000406052 1458 ntBASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 SCARNA12-201ENST00000459155 270 ntBASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 AL157791.1-201ENST00000553667 1699 ntBASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.49□□□□□ -0.09
SHROOM3Q8TF72 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 FRMPD2B-201ENST00000431305 1347 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 AC234782.1-201ENST00000451950 919 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 RN7SL11P-201ENST00000471305 293 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 KLF17P1-201ENST00000547105 1126 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 RN7SL163P-201ENST00000583100 276 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHROOM3Q8TF72 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 MIR1227-201ENST00000408484 88 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC135983.4-201ENST00000564116 1262 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms