Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.53□□□□□ -0.08
USP39Q53GS9 ALG1L6P-201ENST00000515248 758 ntBASIC14.53□□□□□ -0.08
USP39Q53GS9 TMCO5B-205ENST00000530020 894 ntBASIC14.53□□□□□ -0.08
USP39Q53GS9 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.53□□□□□ -0.08
USP39Q53GS9 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.53□□□□□ -0.08
USP39Q53GS9 AC124068.2-201ENST00000569473 1109 ntBASIC14.53□□□□□ -0.08
USP39Q53GS9 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.53□□□□□ -0.08
USP39Q53GS9 AC127024.7-201ENST00000625101 200 ntBASIC14.53□□□□□ -0.08
USP39Q53GS9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.53□□□□□ -0.08
USP39Q53GS9 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.53□□□□□ -0.08
USP39Q53GS9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
USP39Q53GS9 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
USP39Q53GS9 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.53□□□□□ -0.08
USP39Q53GS9 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
USP39Q53GS9 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.08
USP39Q53GS9 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
USP39Q53GS9 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.52□□□□□ -0.08
USP39Q53GS9 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.52□□□□□ -0.08
USP39Q53GS9 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
USP39Q53GS9 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
USP39Q53GS9 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
USP39Q53GS9 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
USP39Q53GS9 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
USP39Q53GS9 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
USP39Q53GS9 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
USP39Q53GS9 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AP000911.2-201ENST00000534330 502 ntBASIC14.52□□□□□ -0.09
USP39Q53GS9 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.52□□□□□ -0.09
USP39Q53GS9 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.52□□□□□ -0.09
USP39Q53GS9 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.52□□□□□ -0.09
USP39Q53GS9 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.52□□□□□ -0.09
USP39Q53GS9 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC138466.4-201ENST00000623965 852 ntBASIC14.52□□□□□ -0.09
USP39Q53GS9 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
USP39Q53GS9 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 AC092135.3-201ENST00000624151 1846 ntBASIC14.52□□□□□ -0.09
USP39Q53GS9 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.52□□□□□ -0.09
USP39Q53GS9 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
USP39Q53GS9 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.52□□□□□ -0.09
USP39Q53GS9 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.52□□□□□ -0.09
USP39Q53GS9 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.52□□□□□ -0.09
USP39Q53GS9 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USP39Q53GS9 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.51□□□□□ -0.09
USP39Q53GS9 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USP39Q53GS9 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
USP39Q53GS9 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.51□□□□□ -0.09
USP39Q53GS9 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
USP39Q53GS9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
USP39Q53GS9 AC015802.1-201ENST00000588104 1449 ntBASIC14.51□□□□□ -0.09
USP39Q53GS9 LINC01815-202ENST00000641468 1409 ntBASIC14.51□□□□□ -0.09
USP39Q53GS9 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
USP39Q53GS9 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
USP39Q53GS9 KRT8P28-201ENST00000433288 1390 ntBASIC14.51□□□□□ -0.09
USP39Q53GS9 HSPA7-201ENST00000445535 1927 ntBASIC14.51□□□□□ -0.09
USP39Q53GS9 AC015656.1-201ENST00000624209 3578 ntBASIC14.51□□□□□ -0.09
USP39Q53GS9 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.51□□□□□ -0.09
USP39Q53GS9 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms