Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 ABR-205ENST00000544583 5595 ntTSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.78□□□□□ -0.36
H3F3AP84243 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
H3F3AP84243 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
H3F3AP84243 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.77□□□□□ -0.36
H3F3AP84243 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
H3F3AP84243 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
H3F3AP84243 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
H3F3AP84243 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.77□□□□□ -0.36
H3F3AP84243 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
H3F3AP84243 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 HIST2H2BC-201ENST00000498492 580 ntBASIC12.77□□□□□ -0.37
H3F3AP84243 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC12.77□□□□□ -0.37
H3F3AP84243 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC12.77□□□□□ -0.37
H3F3AP84243 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.77□□□□□ -0.37
H3F3AP84243 MAX-218ENST00000557746 571 ntTSL 4 BASIC12.77□□□□□ -0.37
H3F3AP84243 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.77□□□□□ -0.37
H3F3AP84243 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
H3F3AP84243 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.77□□□□□ -0.37
H3F3AP84243 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.77□□□□□ -0.37
H3F3AP84243 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.77□□□□□ -0.37
H3F3AP84243 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
H3F3AP84243 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
H3F3AP84243 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
H3F3AP84243 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 AL359881.3-201ENST00000602640 1721 ntBASIC12.76□□□□□ -0.37
H3F3AP84243 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.76□□□□□ -0.37
H3F3AP84243 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.76□□□□□ -0.37
H3F3AP84243 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
H3F3AP84243 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms