Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AP000356.3-201ENST00000382243 753 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
GFRA1P56159 LINC00265-2P-201ENST00000413372 782 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 AL512306.1-201ENST00000432698 848 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC12.74□□□□□ -0.37
GFRA1P56159 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 MRPL22P1-201ENST00000505398 616 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC12.74□□□□□ -0.37
GFRA1P56159 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC12.74□□□□□ -0.37
GFRA1P56159 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC12.74□□□□□ -0.37
GFRA1P56159 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.74□□□□□ -0.37
GFRA1P56159 BAP1-211ENST00000615113 489 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AC009145.4-201ENST00000625119 1294 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
GFRA1P56159 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.74□□□□□ -0.37
GFRA1P56159 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
GFRA1P56159 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.74□□□□□ -0.37
GFRA1P56159 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
GFRA1P56159 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
GFRA1P56159 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
GFRA1P56159 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
GFRA1P56159 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
GFRA1P56159 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 MIR33B-201ENST00000385104 96 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.73□□□□□ -0.37
GFRA1P56159 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 DNAJB1P1-201ENST00000429417 1024 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 AC098934.1-203ENST00000442868 1262 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.73□□□□□ -0.37
GFRA1P56159 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.73□□□□□ -0.37
GFRA1P56159 SLC25A15P3-201ENST00000505530 290 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC12.73□□□□□ -0.37
GFRA1P56159 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 SIGLEC22P-201ENST00000599104 714 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.73□□□□□ -0.37
GFRA1P56159 AC242376.2-201ENST00000619355 883 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.73□□□□□ -0.37
GFRA1P56159 AP001184.1-201ENST00000637936 376 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 AL805961.1-201ENST00000642026 753 ntBASIC12.73□□□□□ -0.37
GFRA1P56159 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.73□□□□□ -0.37
GFRA1P56159 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.73□□□□□ -0.37
GFRA1P56159 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.73□□□□□ -0.37
GFRA1P56159 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms