Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.53□□□□□ -0.24
SOX3P41225 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.53□□□□□ -0.24
SOX3P41225 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 AC013355.1-201ENST00000562625 723 ntBASIC13.53□□□□□ -0.24
SOX3P41225 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.53□□□□□ -0.24
SOX3P41225 AC008805.1-201ENST00000590892 364 ntBASIC13.53□□□□□ -0.24
SOX3P41225 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 AC068587.8-201ENST00000641239 219 ntBASIC13.53□□□□□ -0.24
SOX3P41225 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SOX3P41225 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 AL590440.2-201ENST00000641973 1595 ntBASIC13.53□□□□□ -0.24
SOX3P41225 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.53□□□□□ -0.24
SOX3P41225 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.53□□□□□ -0.24
SOX3P41225 AC015688.4-201ENST00000580780 1647 ntBASIC13.53□□□□□ -0.24
SOX3P41225 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SOX3P41225 AC139712.1-201ENST00000378256 1875 ntBASIC13.53□□□□□ -0.24
SOX3P41225 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.53□□□□□ -0.24
SOX3P41225 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SOX3P41225 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
SOX3P41225 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
SOX3P41225 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
SOX3P41225 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
SOX3P41225 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.52□□□□□ -0.24
SOX3P41225 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
SOX3P41225 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
SOX3P41225 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AC016700.1-201ENST00000429424 312 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AL157407.1-201ENST00000435784 904 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AL645933.1-201ENST00000440087 609 ntBASIC13.52□□□□□ -0.25
SOX3P41225 BX284668.4-201ENST00000453917 508 ntBASIC13.52□□□□□ -0.25
SOX3P41225 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.52□□□□□ -0.25
SOX3P41225 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.52□□□□□ -0.25
SOX3P41225 AC103988.2-201ENST00000561804 725 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.52□□□□□ -0.25
SOX3P41225 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.52□□□□□ -0.25
SOX3P41225 AC090164.2-201ENST00000611487 516 ntBASIC13.52□□□□□ -0.25
SOX3P41225 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.52□□□□□ -0.25
SOX3P41225 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.52□□□□□ -0.25
SOX3P41225 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.52□□□□□ -0.25
SOX3P41225 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
SOX3P41225 KRT8P28-201ENST00000433288 1390 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AC090505.1-201ENST00000430515 1834 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.52□□□□□ -0.25
SOX3P41225 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 AGGF1P1-201ENST00000509500 2073 ntBASIC13.52□□□□□ -0.25
SOX3P41225 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC13.52□□□□□ -0.25
SOX3P41225 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.52□□□□□ -0.25
SOX3P41225 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
SOX3P41225 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SOX3P41225 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
SOX3P41225 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
SOX3P41225 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.51□□□□□ -0.25
SOX3P41225 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SOX3P41225 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SOX3P41225 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms